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4 细胞的诞生
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水平基因转移的问题与物种形成
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Martin WF. Early evolution without a tree of life. Biology Direct6: 36 (2011).
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Nelson-Sathi S et al. Origins of major archaeal clades correspond to gene acquisitions from bacteria. Naturedoi: 10.1038/nature13805 (2014).
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基于不到1%基因绘制的“通用生命树”
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Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, et al. Toward automatic reconstruction of a highly resolved tree of life. Science311: 1283–87 (2006).
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Dagan T, Martin W. The tree of one percent. Genome Biology7: 118 (2006).
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古菌和细菌中保留的基因
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Charlebois RL, Doolittle WF. Computing prokaryotic gene ubiquity: Rescuing the core from extinction. Genome Research14: 2469–77 (2004).
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Koonin EV. Comparative genomics, minimal gene-sets and the last universal common ancestor. Nature Reviews Microbiology 1: 127–36 (2003).
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Sousa FL, Thiergart T, Landan G, Nelson-Sathi S, Pereira IAC, Allen JF, Lane N, Martin WF. Early bioenergetic evolution. Philosophical Transactions of the Royal Society B368: 20130088 (2013).
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露卡自相矛盾的特征
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Dagan T, Martin W. Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proceedings National Academy Sciences USA104: 870–75 (2007).
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Edgell DR, Doolittle WF. Archaea and the origin(s) of DNA replication proteins. Cell89: 995–98 (1997).
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Koga Y, Kyuragi T, Nishihara M, Sone N. Did archaeal and bacterial cells arise independently from noncellular precursors? A hypothesis stating that the advent of membrane phospholipid with enantiomeric glycerophosphate backbones caused the separation of the two lines of descent. Journal of Molecular Evolution46: 54–63 (1998).
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Leipe DD, Aravind L, Koonin EV. Did DNA replication evolve twice independently? Nucleic Acids Research27: 3389–3401 (1999).
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Martin W, Russell MJ. On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells. Philosophical Transactions Royal Society B358: 59–83 (2003).
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膜脂质的问题
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Lane N, Martin W. The origin of membrane bioenergetics. Cell 151: 1406–16 (2012).
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Lombard J, López-García P, Moreira D. The early evolution of lipid membranes and the three domains of life. Nature Reviews in Microbiology10: 507–15 (2012).
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Shimada H, Yamagishi A. Stability of heterochiral hybrid membrane made of bacterial sn-G3P lipids and archaeal sn-G1P lipids. Biochemistry50: 4114–20 (2011).
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Valentine D. Adaptations to energy stress dictate the ecology and evolution of the Archaea. Nature Reviews Microbiology5: 1070–77 (2007).
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